Bibliography

Journals

  • Dewan Md. Farid, Mohammad Abdullah Al-Mamun, Bernard Manderick, Ann Nowe, An adaptive rule-based classifier for mining big biological data, Expert Systems with Applications, Elsevier (submitted).
  • Dewan Md. Farid, Ann Nowé, Bernard Manderick, An ensemble clustering for mining high-dimensional biological big data, International Journal of Design & Nature and Ecodynamics, 2016 (Accepted).
  • Antonio Colaprico, Tiago C. Silva, Catharina Olsen, Luciano Garofano, Claudia Cava, Davide Garolini, Thais S. Sabedot, Tathiane M. Malta, Stefano M. Pagnotta, Isabella Castiglioni, Michele Ceccarelli, Gianluca Bontempi, and Houtan Noushmehr. TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data. Nucleic Acids Res. 2015: gkv1507v1-gkv1507.
  • G. Bontempi, M. Flauders, From dependency to causality: a machine learning approach, Journal of Machine Learning Research, 2437−2457, 2015.
  • A. Gazzo, D. Daneels, E. Cilia, M. Bonduelle, M. Abramowicz, S. Van Dooren, G. Smits and T. Lenaerts, DIDA: a curated and annotated digenic diseases database. NAR, 2015
  • D. Raimondi, A. Gazzo, M. Rooman, T. Lenaerts and W.F. Vranken, Multi-level biological characterization of exomic variants are the protein level significantly improves the identification of their deleterious effects, Bioinformatics, 2015
  • A. Colaprico, C. Cava, G. Bertoli, G. Bontempi, I. Castiglioni , Integrative Analysis with Monte Carlo Cross-Validation Reveals miRNAs Regulating Pathways Cross-Talk in Aggressive Breast Cancer. BioMed research international, 2015
  • C. Olsen, K. Fleming, N.  Prendergast, R.  Rubio, F.  Emmert-Streib,G.  Bontempi, J.  Quackenbush, B.  Haibe-Kains, Benjamin (2015). Using shRNA experiments to validate gene regulatory networks, Genomics Data, 4: 123-126
  • A. Dal Pozzolo, O. Caelen, G. Bontempi. When is Undersampling Effective in Unbalanced Classification Tasks? Machine Learning and Knowledge Discovery in Databases, 200-215, 2015.

 

Conference proceedings

  • Dewan Md. Farid, Ann Nowé, Bernard Manderick, An ensemble clustering for mining high-dimensional biological big data, International Conference on Big Data, 3-5 May 2016, Alicante, Spain (Accepted).
  • D. Sengupta, D. Croes, S. Kapoor, S. Van Dooren, M. Bonduelle, and A. Nowé (2015). CliniPhenome: Clinical and Phenotypic Annotation Database, Proceedings of 2nd International Conference on Health Informatics & Technology, 2015 (doi: 10.4172/2157-7420.S1.006).
  • G. Bontempi (2014) A Monte Carlo strategy for structured multiple-step-ahead time series prediction, IJCNN, International Joint Conference on Neural Networks, 2014.
  • M. Lopes, G. Bontempi (2014) On the Null Distribution of the Precision and Recall Curve ECML 2014, European Conference on Machine Learning, 2014
  • A. Dal Pozzolo, G. Bontempi (2015) When is undersampling effective in unbalanced classification tasks? ECML 2015, European 

 

Poster presentations

  • Sengupta D., Croes D., Kapoor S., M. Bonduelle, Van Dooren S. and Nowé A. (2016). CliniPhenome.  National Symposium on Computational Systems Biology (NSCSB 2016), 18 - 20 March 2016, JUIT Solan, India.
  • Helaers R. and Vikkula M. (2016). Highlander: variant filtering made easier, First Joint Meeting of the Belgian and Dutch Society of Human Genetics, 4-5 February 2016 Leuven, Belgium
  • Daneels D., Grau I., Sengupta D., Bonduelle M., Farid D. Md., Croes D., Nowé A., and Van Dooren S. (2016). GeVaCT : GENOMIC VARIANT CLASSIFIER TOOL. First Joint Meeting of the Belgian and Dutch Society of Human Genetics, 4-5 February 2016 Leuven, Belgium.
  • Helaers R. and Vikkula M. (2015). Highlander: variant filtering made easier, 10th Benelux Bioinformatics Conference, 7-8 December 2015, Antwerp, Belgium.
  • Grau I., Daneels D., Van Dooren S., Bonduelle M., Farid D. Md., Croes D., Nowé A., and Sengupta D. (2015). GeVaCT : GENOMIC VARIANT CLASSIFIER TOOL. 10th Benelux Bioinformatics Conference, Antwerp, Belgium, 7-8 Dec. 2015. 
  • Helaers R. and Vikkula M. (2015). Highlander: variant filtering made easier, Genome Informatics, 28-31 October 2015, Cold Spring Harbor, United States
  • Sengupta D., Croes D., Van Dooren S., Bonduelle M., and Nowé A. (2015). CliniPhenome: Clinical and Phenotypic Annotation Database. Belgian Medical Genomics Initiative - 2015 Annual Meeting, April 20th 2015, Ghent, Belgium.
  • Helaers R. and Vikkula M. (2014). Highlander: variant filtering made easier, Belgian Medical Genomics Initiative - 2015 Annual Meeting, April 20th 2015, Ghent, Belgium
  • Helaers R. and Vikkula M. (2014). Highlander: variant filtering made easier, 15th Annual Meeting of the Belgian Society of Human Genetics. Charleroi, Belgium, 6th of March 2015
  • Gazzo A., Daneels D., Cilia E., Van Dooren S., Smits G. and Lenaerts T. (2014). DIDA: a first database of digenic disease. 9th Benelux Bioinformatics Conference, Luxemburg, December 8th-9th 2014.
  • Reggiani C., Smits G., Vilain C. and Bontempi G. (2014). Distinguish between pathogenic and benign cnv in rare disease: a feature selection approach. 9th Benelux Bioinformatics Conference, Luxemburg, December 8th-9th 2014.
  • Mirta B., Quentric M., Helaers R., Revencu N, Bayet B., Vikkula M. (2014). Whole Exome Sequencing (WES) to Analyze the Genetic Basis of Non Syndromic Cleft Lip and Palate., 64th Annual Meeting of the American Society of Human Genetics. San Diego, United States, October 18th – 22th 2014.
  • Helaers R. and Vikkula M. (2014). Highlander: variant filtering made easier, 14th Genome Informatics conference. Cambridge, United Kingdom, September 21st – 24th 2014.
  • Daneels D., Peeters U., Brugada P., Bonduelle M., Gazzo A., Raimondi D., Peirsman L., Timmermans I., Pappaert G., Van Malderen S., Biervliet M., Verdonck D. and Van Dooren S. (2014). Mutation analysis of the SCN5A gene in 122 Brugada syndrome probands. 14th Annual Meeting of the Belgian Society of Human Genetics. Antwerp, Belgium, 3rd of February 2014.
  • Helaers R. and Vikkula M. (2014). Highlander: variant filtering made easier, 14th Annual Meeting of the Belgian Society of Human Genetics. Antwerp, Belgium, 3rd of February 2014
  • Helaers R. and Vikkula M. (2014). Highlander: variant filtering made easier, 47th Annual Meeting of the European Society of Human Genetics. Milan, Italy, May 31st – June 3rd 2014